Specifications

Specifications

FeatureDescription
Number of Markers2,379,855
Number of Custom Markers200,000
Number of Samples per BeadChip8
DNA Requirement200 ng
AssayInfinium® LCG
Instrument SupportHiScanSQ or iScan
Sample Throughput*~1,067 samples / week
Scan Time per Sample6.5 min (HiScanSQ)
11.4 min (iScan)

% Variation Captured
(r2 > 0.8)

1 kGP*
MAF >5%

1 kGP*
MAF >1%

CEU

0.830.73

CHB + JPT

0.830.73

YRI

0.650.51
Data PerformanceValue**/Product Specification*
Call Rate99.65% / >99% avg.
Reproducibility99.99% / >99.9%
Log R Deviation0.12 / <0.30
SpacingMean / Medium / 90th%*
Spacing (kb)1.19 / 0.64 / 2.76
Marker CategoriesNumber of Markers*
Number of SNPs with 10 kb of RefSeq1,231,382
MHC/ADME19,238 / 27,335
Non synonymous SNPs41,900
Sex Chromosome
(X / Y / PAR Loci)
55,208 / 2,561/ 418
Mitochondrial256

Estimate assumes one HiScan system, one AutoLoader2, one Tecan robot, and a five-day work week.

* Compared against June 2011 1kGP data release.

** Values are derived from genotyping 470 reference samples.

Value expected for typical projects, excluding tumor samples or any samples prepared not following standard Illumina protocols.